120612b_TraDES_Source.tar.gz
README
README.unpack
TraDES-2-20120612-BioSlax_x32.tar.gz
TraDES-2-20120612-CentOS5_5_x86.tar.gz
TraDES-2-20120612-CentOS5_5_x86_64.tar.gz
TraDES-2-20120612-CentOS6_x86_64.tar.gz
TraDES-2-20120612-Fedora14_x86.tar.gz
TraDES-2-20120612-Fedora14_x86_64.tar.gz
TraDES-2-20120612-FreeBSD9_x86_64.tar.gz
TraDES-2-20120612-MacOSX10_4_PPC.tar.gz
TraDES-2-20120612-MacOSX10_6_x86.tar.gz
TraDES-2-20120612-OpenSUSE11_3_x86_64.tar.gz
TraDES-2-20120612-Ubuntu11_x86.tar.gz
TraDES-2-20120612-Ubuntu11_x86_64.tar.gz
TraDES-2-20120612-Windows32.zip
TraDES-2-20120612-illumOS_x86_64.tar.gz
TraDES-WindowsXP-VisTraj.zip
copyright

The Blueprint Initiative
Christopher W. V. Hogue chogue@blueprint.org

TraDES-2 Download Hosting
https://us-east.manta.joyent.com/profhogue/public/TraDES-2/index.html

README

LAST UPDATE OF THIS README: Wed Nov 26 2014
 --->20120612 is the current TraDES-2 release.
 --->IMPORTANT NOTE:
     If you are using TraDES structures, use the command-line argument 
     -k T 
     This disables a PCA rotation bug that may flip the Z axis of some 3D structures.


To see what is new - read the whatsnew.txt file 
It is in the ./TraDES-2/ directory in the executable distribution.
The source code archive has the file buried here: 
/nusi/TraDES/common/Documentation/whatsnew.txt

------------------------------------------
This area contains information of interest
organized into the following directories according
to projects.  Files/Directories are released as
indicated on their data/timestamp.

This area contains data files and programs related to the
TraDES structural biology project conducted in the research 
laboratory of CWV. Hogue.

Please read the README files in each directory
for more details, including licence and data policies.

----------------------------------------------------------------
TraDES is a package that makes large numbers of protein 3D structures
by sampling protein conformational space, and contains tools for 
visualization, ensemble filtering, protein unfolding and analysis tools.

FILES------------------------------------------------------------
   DISTIBUTION Executables
TraDES-2-YYYYMMDD_OS.[tar.gz|zip]
			Points to the most recent release of the
			foldtraj software for a given OS;
			
   SOURCE CODE
YYMMDDx_TraDES_Source.tar.gz
			Trades Source code for Win/Mac/Unix
			BSD licence, plus 3rd-party licenses
			Instructions and compile scripts included.

-----------------------------------------------------------------

To extract on unix:

gzip -d [package name]-[release date]-[OS].tar.gz
tar -xvf [package name]-[release date]-[OS].tar

where [OS] is one of linux-i386, solaris, irix6x, etc.

on Windows:

pkunzip -d [package name]-[release date]-Windows32.zip

or use 7zip, Compressed Folders or a similar program.

Use 7zip on Windows to uncompress the Source Code.



------------------------------------
Inquires:  	chogue@blueprint.org
------------------------------------